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python-biopython  1.60
Namespaces | Variables
www_blast.py File Reference

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Namespaces

namespace  www_blast

Variables

tuple www_blast.file_for_blast = open('m_cold.fasta', 'r')
tuple www_blast.f_iterator = Fasta.Iterator(file_for_blast)
tuple www_blast.f_record = f_iterator.next()
tuple www_blast.result_handle = NCBIWWW.qblast('blastn', 'nr', f_record)
tuple www_blast.save_file = open('m_cold_blast.out', 'w')
tuple www_blast.blast_results = result_handle.read()
tuple www_blast.b_parser = NCBIWWW.BlastParser()
tuple www_blast.string_result_handle = cStringIO.StringIO(blast_results)
tuple www_blast.b_record = b_parser.parse(string_result_handle)
float www_blast.E_VALUE_THRESH = 0.1