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python-biopython  1.60
Namespaces | Variables
test_align.py File Reference

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Namespaces

namespace  test_align

Variables

tuple test_align.alignment = MultipleSeqAlignment([], Alphabet.generic_alphabet)
string test_align.letters = "AbcDefGhiJklMnoPqrStuVwxYz"
tuple test_align.test_dir = os.path.join(os.getcwd(), 'Clustalw')
list test_align.test_names = ['opuntia.aln', 'cw02.aln']
list test_align.test_files = []
tuple test_align.align_info = AlignInfo.SummaryInfo(alignment)
tuple test_align.consensus = align_info.dumb_consensus()
tuple test_align.ks = align_info.replacement_dictionary(['N'])
list test_align.second_seq = alignment[1]
dictionary test_align.e_freq
tuple test_align.e_freq_table
list test_align.chars_to_ignore = ['N']
tuple test_align.to_parse = os.path.join(os.curdir, 'Quality', 'example.fasta')