Back to index

python-biopython  1.60
Namespaces | Variables
test_BioSQL_SeqIO.py File Reference

Go to the source code of this file.

Namespaces

namespace  test_BioSQL_SeqIO

Variables

string test_BioSQL_SeqIO.message = "Check settings in Tests/setup_BioSQL.py "
string test_BioSQL_SeqIO.db_name = "biosql-seqio-test"
list test_BioSQL_SeqIO.test_files
tuple test_BioSQL_SeqIO.server
tuple test_BioSQL_SeqIO.db = server.new_database(db_name)
int test_BioSQL_SeqIO.db_count = 0
tuple test_BioSQL_SeqIO.iterator = SeqIO.parse(handle=open(t_filename,"r"), format=t_format)
tuple test_BioSQL_SeqIO.count = db.load(iterator)
 test_BioSQL_SeqIO.key = record.name
tuple test_BioSQL_SeqIO.db_rec = db.lookup(name=key)
tuple test_BioSQL_SeqIO.accs = sorted(set(record.annotations["accessions"]))