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python-biopython  1.60
Classes | Namespaces | Functions | Variables
psw.py File Reference

Go to the source code of this file.

Classes

class  Bio.Wise.psw.AlignmentColumnFullException
class  Bio.Wise.psw.Alignment
class  Bio.Wise.psw.AlignmentColumn
class  Bio.Wise.psw.ColumnUnit

Namespaces

namespace  Bio.Wise.psw

Functions

def Bio.Wise.psw.parse_line
def Bio.Wise.psw.parse
def Bio.Wise.psw.align
def Bio.Wise.psw.main
def Bio.Wise.psw._test

Variables

string Bio.Wise.psw.__version__ = "$Revision: 1.5 $"
list Bio.Wise.psw._CMDLINE_PSW = ["psw", "-l", "-F"]
string Bio.Wise.psw._OPTION_GAP_START = "-g"
string Bio.Wise.psw._OPTION_GAP_EXTENSION = "-e"
string Bio.Wise.psw._OPTION_SCORES = "-m"
tuple Bio.Wise.psw._re_unit = re.compile(r"^Unit +([01])- \[ *(-?\d+)- *(-?\d+)\] \[(\w+)\]$")

Class Documentation

class Bio::Wise::psw::AlignmentColumnFullException

Definition at line 27 of file psw.py.