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python-biopython  1.60
Classes | Namespaces | Functions | Variables
pairwise2.py File Reference

Go to the source code of this file.

Classes

class  Bio.pairwise2.align
class  Bio.pairwise2.align.alignment_function
class  Bio.pairwise2.identity_match
class  Bio.pairwise2.dictionary_match
class  Bio.pairwise2.affine_penalty

Namespaces

namespace  Bio.pairwise2

Functions

def Bio.pairwise2._align
def Bio.pairwise2._make_score_matrix_generic
def Bio.pairwise2._make_score_matrix_fast
def Bio.pairwise2._recover_alignments
def Bio.pairwise2._find_start
def Bio.pairwise2._find_global_start
def Bio.pairwise2._find_local_start
def Bio.pairwise2._clean_alignments
def Bio.pairwise2._pad_until_equal
def Bio.pairwise2._lpad_until_equal
def Bio.pairwise2._pad
def Bio.pairwise2._lpad
def Bio.pairwise2.rint
def Bio.pairwise2.calc_affine_penalty
def Bio.pairwise2.print_matrix
def Bio.pairwise2.format_alignment
def Bio.pairwise2._test

Variables

int Bio.pairwise2.MAX_ALIGNMENTS = 1000
tuple Bio.pairwise2.align = align()
int Bio.pairwise2._PRECISION = 1000