Back to index

python-biopython  1.60
Classes | Variables
test_NCBI_BLAST_tools Namespace Reference

Classes

class  Pairwise
class  CheckCompleteArgList

Variables

list wanted
dictionary exe_names = {}
tuple likely_dirs = os.environ.get("PATH", "")
tuple exe_name = os.path.join(folder, name+".exe")
tuple child
tuple runner = unittest.TextTestRunner(verbosity = 2)

Variable Documentation

Initial value:
00001 subprocess.Popen(exe_name + " -h",
00002                                  stdout=subprocess.PIPE,
00003                                  stderr=subprocess.PIPE,
00004                                  universal_newlines=True,
00005                                  shell=(sys.platform!="win32"))

Definition at line 45 of file test_NCBI_BLAST_tools.py.

tuple test_NCBI_BLAST_tools.exe_name = os.path.join(folder, name+".exe")

Definition at line 37 of file test_NCBI_BLAST_tools.py.

Definition at line 20 of file test_NCBI_BLAST_tools.py.

tuple test_NCBI_BLAST_tools.likely_dirs = os.environ.get("PATH", "")

Definition at line 29 of file test_NCBI_BLAST_tools.py.

tuple test_NCBI_BLAST_tools.runner = unittest.TextTestRunner(verbosity = 2)

Definition at line 282 of file test_NCBI_BLAST_tools.py.

Initial value:
00001 ["blastx", "blastp", "blastn", "tblastn", "tblastx",
00002           "rpsblast", "rpstblastn", "psiblast", "blast_formatter"]

Definition at line 18 of file test_NCBI_BLAST_tools.py.