Back to index

python-biopython  1.60
Variables
simplepredict Namespace Reference

Variables

int inc = 1
string infn = "./noed.xpk"
string outfn = "./out_example.xpk"
string detectatom = "H1"
string relayatom = "N15"
string fromatom = "15N2"
tuple peaklist = xpktools.Peaklist(infn)
tuple dict = peaklist.residue_dict(detectatom)
list MAXRES = dict["maxres"]
list MINRES = dict["minres"]
int count = 0
 res = MINRES
list outlist = []
tuple noe1 = NOEtools.predictNOE(peaklist,"15N2","H1",res,res+inc)
tuple noe2 = NOEtools.predictNOE(peaklist,"15N2","H1",res,res-inc)
tuple entry1 = xpktools.XpkEntry(noe1,peaklist.datalabels)
tuple outfile = open(outfn,'a')

Variable Documentation

Definition at line 118 of file simplepredict.py.

string simplepredict.detectatom = "H1"

Definition at line 69 of file simplepredict.py.

tuple simplepredict.dict = peaklist.residue_dict(detectatom)

Definition at line 91 of file simplepredict.py.

tuple simplepredict.entry1 = xpktools.XpkEntry(noe1,peaklist.datalabels)

Definition at line 142 of file simplepredict.py.

string simplepredict.fromatom = "15N2"

Definition at line 71 of file simplepredict.py.

Definition at line 66 of file simplepredict.py.

string simplepredict.infn = "./noed.xpk"

Definition at line 67 of file simplepredict.py.

list simplepredict.MAXRES = dict["maxres"]

Definition at line 99 of file simplepredict.py.

list simplepredict.MINRES = dict["minres"]

Definition at line 100 of file simplepredict.py.

tuple simplepredict.noe1 = NOEtools.predictNOE(peaklist,"15N2","H1",res,res+inc)

Definition at line 132 of file simplepredict.py.

tuple simplepredict.noe2 = NOEtools.predictNOE(peaklist,"15N2","H1",res,res-inc)

Definition at line 133 of file simplepredict.py.

tuple simplepredict.outfile = open(outfn,'a')

Definition at line 169 of file simplepredict.py.

string simplepredict.outfn = "./out_example.xpk"

Definition at line 68 of file simplepredict.py.

Definition at line 120 of file simplepredict.py.

tuple simplepredict.peaklist = xpktools.Peaklist(infn)

Definition at line 80 of file simplepredict.py.

string simplepredict.relayatom = "N15"

Definition at line 70 of file simplepredict.py.

Definition at line 119 of file simplepredict.py.