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python-biopython  1.60
Namespace List
Here is a list of all namespaces with brief descriptions:
ACT_example
Bio
Bio._py3k
Bio.Affy
Bio.Affy.CelFile
Bio.Align
Bio.Align.AlignInfo
Bio.Align.Applications
Bio.Align.Applications._ClustalOmega
Bio.Align.Applications._Clustalw
Bio.Align.Applications._Dialign
Bio.Align.Applications._Mafft
Bio.Align.Applications._Muscle
Bio.Align.Applications._Prank
Bio.Align.Applications._Probcons
Bio.Align.Applications._TCoffee
Bio.Align.Generic
Bio.AlignIO
Bio.AlignIO.ClustalIO
Bio.AlignIO.EmbossIO
Bio.AlignIO.FastaIO
Bio.AlignIO.Interfaces
Bio.AlignIO.NexusIO
Bio.AlignIO.PhylipIO
Bio.AlignIO.StockholmIO
Bio.Alphabet
Bio.Alphabet.IUPAC
Bio.Alphabet.Reduced
Bio.Application
Bio.bgzf
Bio.Blast
Bio.Blast.Applications
Bio.Blast.NCBIStandalone
Bio.Blast.NCBIWWW
Bio.Blast.NCBIXML
Bio.Blast.ParseBlastTable
Bio.Blast.Record
Bio.CAPS
Bio.Cluster
Bio.Compass
Bio.Crystal
Bio.Data
Bio.Data.CodonTable
Bio.Data.IUPACData
Bio.DocSQL
Bio.Emboss
Bio.Emboss.Applications
Bio.Emboss.Primer3
Bio.Emboss.PrimerSearch
Bio.Entrez
Bio.Entrez.Parser
Bio.ExPASy
Bio.ExPASy.Enzyme
Bio.ExPASy.Prodoc
Bio.ExPASy.Prosite
Bio.ExPASy.ScanProsite
Bio.File
Bio.FSSP
Bio.FSSP.fssp_rec
Bio.FSSP.FSSPTools
Bio.GA
Bio.GA.Crossover
Bio.GA.Crossover.General
Bio.GA.Crossover.GeneralPoint
Bio.GA.Crossover.Point
Bio.GA.Crossover.TwoPoint
Bio.GA.Crossover.Uniform
Bio.GA.Evolver
Bio.GA.Mutation
Bio.GA.Mutation.General
Bio.GA.Mutation.Simple
Bio.GA.Organism
Bio.GA.Repair
Bio.GA.Repair.Stabilizing
Bio.GA.Selection
Bio.GA.Selection.Abstract
Bio.GA.Selection.Diversity
Bio.GA.Selection.RouletteWheel
Bio.GA.Selection.Tournament
Bio.GenBank
Bio.GenBank.Record
Bio.GenBank.Scanner
Bio.GenBank.utils
Bio.Geo
Bio.Geo.Record
Bio.Graphics
Bio.Graphics.BasicChromosome
Bio.Graphics.Comparative
Bio.Graphics.DisplayRepresentation
Bio.Graphics.Distribution
Bio.Graphics.GenomeDiagram
Bio.Graphics.GenomeDiagram._AbstractDrawer
Bio.Graphics.GenomeDiagram._CircularDrawer
Bio.Graphics.GenomeDiagram._Colors
Bio.Graphics.GenomeDiagram._CrossLink
Bio.Graphics.GenomeDiagram._Diagram
Bio.Graphics.GenomeDiagram._Feature
Bio.Graphics.GenomeDiagram._FeatureSet
Bio.Graphics.GenomeDiagram._Graph
Bio.Graphics.GenomeDiagram._GraphSet
Bio.Graphics.GenomeDiagram._LinearDrawer
Bio.Graphics.GenomeDiagram._Track
Bio.HMM
Bio.HMM.DynamicProgramming
Bio.HMM.MarkovModel
Bio.HMM.Trainer
Bio.HMM.Utilities
Bio.HotRand
Bio.Index
Bio.KDTree
Bio.KDTree.KDTree
Bio.KEGG
Bio.KEGG.Compound
Bio.KEGG.Enzyme
Bio.KEGG.Map
Bio.kNN
Bio.LogisticRegression
Bio.MarkovModel
Bio.MaxEntropy
Bio.Medline
Bio.Motif
Bio.Motif._Motif
Bio.Motif.Applications
Bio.Motif.Applications._AlignAce
Bio.Motif.Parsers
Bio.Motif.Parsers.AlignAce
Bio.Motif.Parsers.MAST
Bio.Motif.Parsers.MEME
Bio.Motif.Thresholds
Bio.NaiveBayes
Bio.NeuralNetwork
Bio.NeuralNetwork.BackPropagation
Bio.NeuralNetwork.BackPropagation.Layer
Bio.NeuralNetwork.BackPropagation.Network
Bio.NeuralNetwork.Gene
Bio.NeuralNetwork.Gene.Motif
Bio.NeuralNetwork.Gene.Pattern
Bio.NeuralNetwork.Gene.Schema
Bio.NeuralNetwork.Gene.Signature
Bio.NeuralNetwork.StopTraining
Bio.NeuralNetwork.Training
Bio.Nexus
Bio.Nexus.Nexus
Bio.Nexus.Nodes
Bio.Nexus.Trees
Bio.NMR
Bio.NMR.NOEtools
Bio.NMR.xpktools
Bio.pairwise2
Bio.ParserSupport
Bio.Pathway
Bio.Pathway.Rep
Bio.Pathway.Rep.Graph
Bio.Pathway.Rep.HashSet
Bio.Pathway.Rep.MultiGraph
Bio.PDB
Bio.PDB.AbstractPropertyMap
Bio.PDB.Atom
Bio.PDB.Chain
Bio.PDB.Dice
Bio.PDB.DSSP
Bio.PDB.Entity
Bio.PDB.FragmentMapper
Bio.PDB.HSExposure
Bio.PDB.mmCIF
Bio.PDB.MMCIF2Dict
Bio.PDB.MMCIFParser
Bio.PDB.Model
Bio.PDB.NACCESS
Bio.PDB.NeighborSearch
Bio.PDB.parse_pdb_header
Bio.PDB.PDBExceptions
Bio.PDB.PDBIO
Bio.PDB.PDBList
Bio.PDB.PDBParser
Bio.PDB.Polypeptide
Bio.PDB.PSEA
Bio.PDB.Residue
Bio.PDB.ResidueDepth
Bio.PDB.Selection
Bio.PDB.Structure
Bio.PDB.StructureAlignment
Bio.PDB.StructureBuilder
Bio.PDB.Superimposer
Bio.PDB.Vector
Bio.Phylo
Bio.Phylo._io
Bio.Phylo._sugar
Bio.Phylo._utils
Bio.Phylo.Applications
Bio.Phylo.Applications._Phyml
Bio.Phylo.Applications._Raxml
Bio.Phylo.BaseTree
Bio.Phylo.Newick
Bio.Phylo.NewickIO
Bio.Phylo.NexusIO
Bio.Phylo.PAML
Bio.Phylo.PAML._paml
Bio.Phylo.PAML._parse_baseml
Bio.Phylo.PAML._parse_codeml
Bio.Phylo.PAML._parse_yn00
Bio.Phylo.PAML.baseml
Bio.Phylo.PAML.chi2
Bio.Phylo.PAML.codeml
Bio.Phylo.PAML.yn00
Bio.Phylo.PhyloXML
Bio.Phylo.PhyloXMLIO
Bio.PopGen
Bio.PopGen.Async
Bio.PopGen.Async.Local
Bio.PopGen.FDist
Bio.PopGen.FDist.Async
Bio.PopGen.FDist.Controller
Bio.PopGen.FDist.Utils
Bio.PopGen.GenePop
Bio.PopGen.GenePop.Controller
Bio.PopGen.GenePop.EasyController
Bio.PopGen.GenePop.FileParser
Bio.PopGen.GenePop.LargeFileParser
Bio.PopGen.GenePop.Utils
Bio.PopGen.SimCoal
Bio.PopGen.SimCoal.Async
Bio.PopGen.SimCoal.Cache
Bio.PopGen.SimCoal.Controller
Bio.PopGen.SimCoal.Template
Bio.Restriction
Bio.Restriction._Update
Bio.Restriction._Update.RestrictionCompiler
Bio.Restriction._Update.Update
Bio.Restriction.PrintFormat
Bio.Restriction.RanaConfig
Bio.Restriction.Restriction
Bio.Restriction.Restriction_Dictionary
Bio.SCOP
Bio.SCOP.Cla
Bio.SCOP.Des
Bio.SCOP.Dom
Bio.SCOP.Hie
Bio.SCOP.Raf
Bio.SCOP.Residues
Bio.SCOP.three_to_one_dict
Bio.Search
Bio.Seq
Bio.SeqFeature
Bio.SeqIO
Bio.SeqIO._convert
Bio.SeqIO._index
Bio.SeqIO.AbiIO
Bio.SeqIO.AceIO
Bio.SeqIO.FastaIO
Bio.SeqIO.IgIO
Bio.SeqIO.InsdcIO
Bio.SeqIO.Interfaces
Bio.SeqIO.PhdIO
Bio.SeqIO.PirIO
Bio.SeqIO.QualityIO
Bio.SeqIO.SeqXmlIO
Bio.SeqIO.SffIO
Bio.SeqIO.SwissIO
Bio.SeqIO.TabIO
Bio.SeqIO.UniprotIO
Bio.SeqRecord
Bio.Sequencing
Bio.Sequencing.Ace
Bio.Sequencing.Applications
Bio.Sequencing.Applications._Novoalign
Bio.Sequencing.Phd
Bio.SeqUtils
Bio.SeqUtils.CheckSum
Bio.SeqUtils.CodonUsage
Bio.SeqUtils.CodonUsageIndices
Bio.SeqUtils.IsoelectricPoint
Bio.SeqUtils.lcc
Bio.SeqUtils.MeltingTemp
Bio.SeqUtils.ProtParam
Bio.SeqUtils.ProtParamData
Bio.Statistics
Bio.Statistics.lowess
Bio.SubsMat
Bio.SubsMat.FreqTable
Bio.SubsMat.MatrixInfo
Bio.SVDSuperimposer
Bio.SVDSuperimposer.SVDSuperimposer
Bio.SwissProt
Bio.SwissProt.KeyWList
Bio.TogoWS
Bio.triefind
Bio.UniGene
Bio.UniGene.UniGene
Bio.Wise
Bio.Wise.dnal
Bio.Wise.psw
BioSQL
BioSQL.BioSeq
BioSQL.BioSeqDatabase
BioSQL.DBUtils
BioSQL.Loader
biosql_performance_load
biosql_performance_read
check_output
check_output_simple
clustal_run
debug_blast_parser
do2to3
fasta_dictionary
fasta_iterator
find_parser_problems
gen_results
generate_three_to_one_dict
getgene
local_blast
make_subsmat
nextorf
Proux_et_al_2002_Figure_6
query_pubmed
ranacompiler
rebase_update
requires_internet
requires_wise
run_tests
scop_pdb
seq_tests_common
SeqGui
setup
setup_BioSQL
simplepredict
swissprot
test_Ace
test_align
test_AlignIO
test_AlignIO_convert
test_AlignIO_FastaIO
test_bgzf
test_BioSQL
test_BioSQL_SeqIO
test_CAPS
test_Chi2
test_ClustalOmega_tool
test_Clustalw_tool
test_Cluster
test_CodonTable
test_CodonUsage
test_Compass
test_Crystal
test_Dialign_tool
test_DocSQL
test_Emboss
test_EmbossPhylipNew
test_EmbossPrimer
test_Entrez
test_Enzyme
test_File
test_FSSP
test_GACrossover
test_GAMutation
test_GAOrganism
test_GAQueens
test_GARepair
test_GASelection
test_GenBank
test_GenomeDiagram
test_geo
test_GraphicsBitmaps
test_GraphicsChromosome
test_GraphicsDistribution
test_GraphicsGeneral
test_HMMCasino
test_HMMGeneral
test_HotRand
test_IsoelectricPoint
test_KDTree
test_KEGG
test_KeyWList
test_kNN
test_Location
test_LogisticRegression
test_lowess
test_Mafft_tool
test_MarkovModel
test_Medline
test_MMCIF
test_Motif
test_Muscle_tool
test_NCBI_BLAST_tools
test_NCBI_qblast
test_NCBIStandalone
test_NCBITextParser
test_NCBIXML
test_Nexus
test_NNExclusiveOr
test_NNGene
test_NNGeneral
test_pairwise2
test_PAML_baseml
test_PAML_codeml
test_PAML_tools
test_PAML_yn00
test_ParserSupport
test_Pathway
test_PDB
test_PDB_KDTree
test_Phd
test_Phylo
test_Phylo_depend
test_PhyloXML
test_phyml_tool
test_PopGen_DFDist
test_PopGen_FDist
test_PopGen_FDist_nodepend
test_PopGen_GenePop
test_PopGen_GenePop_EasyController
test_PopGen_GenePop_nodepend
test_PopGen_SimCoal
test_PopGen_SimCoal_nodepend
test_Prank_tool
test_Probcons_tool
test_prodoc
test_prosite1
test_prosite2
test_ProtParam
test_psw
test_raxml_tool
test_Restriction
test_SCOP_Astral
test_SCOP_Cla
test_SCOP_Des
test_SCOP_Dom
test_SCOP_Hie
test_SCOP_online
test_SCOP_Raf
test_SCOP_Residues
test_SCOP_Scop
test_seq
test_Seq_objs
test_SeqIO
test_SeqIO_AbiIO
test_SeqIO_convert
test_SeqIO_FastaIO
test_SeqIO_features
test_SeqIO_index
test_SeqIO_online
test_SeqIO_QualityIO
test_SeqIO_SeqXML
test_SeqIO_write
test_SeqRecord
test_SeqUtils
test_SffIO
test_SubsMat
test_SVDSuperimposer
test_SwissProt
test_TCoffee_tool
test_TogoWS
test_translate
test_trie
test_Tutorial
test_UniGene
test_Uniprot
test_Wise
www_blast
xbb_blast
xbb_blastbg
xbb_help
xbb_search
xbb_sequence
xbb_translations
xbb_utils
xbb_widget
xbbtools