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python-biopython  1.60
Variables
local_blast Namespace Reference

Variables

tuple my_blast_db = os.path.join(os.getcwd(), 'at-est', 'a_cds-10-7.fasta')
tuple my_blast_file
tuple my_blast_exe = os.path.join(os.getcwd(), 'blast', 'blastall')
tuple b_parser = NCBIStandalone.BlastParser()
tuple b_iterator = NCBIStandalone.Iterator(blast_out, b_parser)
tuple b_record = b_iterator.next()
float E_VALUE_THRESH = 0.04
string dots = '...'

Variable Documentation

tuple local_blast.b_iterator = NCBIStandalone.Iterator(blast_out, b_parser)

Definition at line 26 of file local_blast.py.

tuple local_blast.b_parser = NCBIStandalone.BlastParser()

Definition at line 24 of file local_blast.py.

tuple local_blast.b_record = b_iterator.next()

Definition at line 29 of file local_blast.py.

string local_blast.dots = '...'

Definition at line 44 of file local_blast.py.

Definition at line 34 of file local_blast.py.

tuple local_blast.my_blast_db = os.path.join(os.getcwd(), 'at-est', 'a_cds-10-7.fasta')

Definition at line 14 of file local_blast.py.

tuple local_blast.my_blast_exe = os.path.join(os.getcwd(), 'blast', 'blastall')

Definition at line 17 of file local_blast.py.

Initial value:
00001 os.path.join(os.getcwd(), 'at-est', 'test_blast',
00002                              'sorghum_est-test.fasta')

Definition at line 15 of file local_blast.py.