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python-biopython  1.60
Variables
biosql_performance_read Namespace Reference

Variables

tuple server
list db = server["embl_rod"]
tuple start_time = time.time()
tuple all_records = db.items()
 sequence = record.seq.data
 d = record.description
 i = record.id
 n = record.name
tuple end_time = time.time()
tuple num_records = len(all_records)
 elapsed_time = end_time-start_time
 features = record.features
 anns = record.annotations
 dates = record.dates
 species = record.species
 keywords = record.keywords

Variable Documentation

Definition at line 13 of file biosql_performance_read.py.

biosql_performance_read.anns = record.annotations

Definition at line 36 of file biosql_performance_read.py.

biosql_performance_read.d = record.description

Definition at line 16 of file biosql_performance_read.py.

Definition at line 37 of file biosql_performance_read.py.

list biosql_performance_read.db = server["embl_rod"]

Definition at line 9 of file biosql_performance_read.py.

Definition at line 22 of file biosql_performance_read.py.

tuple biosql_performance_read.end_time = time.time()

Definition at line 20 of file biosql_performance_read.py.

Definition at line 35 of file biosql_performance_read.py.

Definition at line 17 of file biosql_performance_read.py.

Definition at line 39 of file biosql_performance_read.py.

Definition at line 18 of file biosql_performance_read.py.

Definition at line 21 of file biosql_performance_read.py.

Definition at line 15 of file biosql_performance_read.py.

Initial value:
00001 BioSeqDatabase.open_database(host = "192.168.0.192", user = "root", 
00002                                        passwd = "", db = "test_biosql")

Definition at line 7 of file biosql_performance_read.py.

Definition at line 38 of file biosql_performance_read.py.

Definition at line 12 of file biosql_performance_read.py.