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python-biopython  1.60
Classes | Variables
Bio.SeqIO._index Namespace Reference

Classes

class  _IndexedSeqFileDict
class  _SQLiteManySeqFilesDict
class  SeqFileRandomAccess
class  SffRandomAccess
class  SffTrimedRandomAccess
class  SequentialSeqFileRandomAccess
class  GenBankRandomAccess
class  EmblRandomAccess
class  SwissRandomAccess
class  UniprotRandomAccess
class  IntelliGeneticsRandomAccess
class  TabRandomAccess
class  FastqRandomAccess

Variables

 _sqlite = None
dictionary _FormatToRandomAccess

Variable Documentation

Initial value:
00001 {"ace" : SequentialSeqFileRandomAccess,
00002                         "embl" : EmblRandomAccess,
00003                         "fasta" : SequentialSeqFileRandomAccess,
00004                         "fastq" : FastqRandomAccess, #Class handles all three variants
00005                         "fastq-sanger" : FastqRandomAccess, #alias of the above
00006                         "fastq-solexa" : FastqRandomAccess,
00007                         "fastq-illumina" : FastqRandomAccess,
00008                         "genbank" : GenBankRandomAccess,
00009                         "gb" : GenBankRandomAccess, #alias of the above
00010                         "ig" : IntelliGeneticsRandomAccess,
00011                         "imgt" : EmblRandomAccess,
00012                         "phd" : SequentialSeqFileRandomAccess,
00013                         "pir" : SequentialSeqFileRandomAccess,
00014                         "sff" : SffRandomAccess,
00015                         "sff-trim" : SffTrimedRandomAccess,
00016                         "swiss" : SwissRandomAccess,
00017                         "tab" : TabRandomAccess,
00018                         "qual" : SequentialSeqFileRandomAccess,
00019                         "uniprot-xml" : UniprotRandomAccess, 
00020                         }

Definition at line 1085 of file _index.py.

Definition at line 43 of file _index.py.