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python-biopython  1.60
Classes | Variables
Bio.PDB.StructureAlignment Namespace Reference

Classes

class  StructureAlignment

Variables

tuple fa = AlignIO.read(open(sys.argv[1]), "fasta", generic_protein)
list pdb_file1 = sys.argv[2]
list pdb_file2 = sys.argv[3]
tuple p = PDBParser()
tuple s1 = p.get_structure('1', pdb_file1)
tuple s2 = p.get_structure('2', pdb_file2)
list m1 = s1[0]
list m2 = s2[0]
tuple al = StructureAlignment(fa, m1, m2)

Variable Documentation

Definition at line 130 of file StructureAlignment.py.

tuple Bio.PDB.StructureAlignment.fa = AlignIO.read(open(sys.argv[1]), "fasta", generic_protein)

Definition at line 115 of file StructureAlignment.py.

Definition at line 127 of file StructureAlignment.py.

Definition at line 128 of file StructureAlignment.py.

tuple Bio.PDB.StructureAlignment.p = PDBParser()

Definition at line 121 of file StructureAlignment.py.

Definition at line 117 of file StructureAlignment.py.

Definition at line 118 of file StructureAlignment.py.

tuple Bio.PDB.StructureAlignment.s1 = p.get_structure('1', pdb_file1)

Definition at line 122 of file StructureAlignment.py.

tuple Bio.PDB.StructureAlignment.s2 = p.get_structure('2', pdb_file2)

Definition at line 124 of file StructureAlignment.py.