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python-biopython  1.60
Classes | Variables
Bio.Alphabet.Reduced Namespace Reference

Classes

class  Murphy15
class  Murphy10
class  Murphy8
class  Murphy4
class  HPModel
class  PC5

Variables

dictionary murphy_15_tab
tuple murphy_15 = Murphy15()
dictionary murphy_10_tab
tuple murphy_10 = Murphy10()
dictionary murphy_8_tab
tuple murphy_8 = Murphy8()
dictionary murphy_4_tab
tuple murphy_4 = Murphy4()
dictionary hp_model_tab
tuple hp_model = HPModel()
dictionary pc_5_table

Variable Documentation

Definition at line 158 of file Reduced.py.

Initial value:
00001 {"A": "P",   # Hydrophilic
00002             "G": "P",
00003             "T": "P",
00004             "S": "P",
00005             "N": "P",
00006             "Q": "P",
00007             "D": "P",
00008             "E": "P",
00009             "H": "P",
00010             "R": "P",
00011             "K": "P",
00012             "P": "P",
00013             "C": "H",  # Hydrophobic
00014             "M": "H",
00015             "F": "H",
00016             "I": "H",
00017             "L": "H",
00018             "V": "H",
00019             "W": "H",
00020             "Y": "H"}

Definition at line 134 of file Reduced.py.

Definition at line 80 of file Reduced.py.

Initial value:
00001 {"L": "L",
00002              "V": "L",
00003              "I": "L",
00004              "M": "L",
00005              "C": "C",
00006              "A": "A",
00007              "G": "G",
00008              "S": "S",
00009              "T": "S",
00010              "P": "P",
00011              "F": "F",
00012              "Y": "F",
00013              "W": "F",
00014              "E": "E",
00015              "D": "E",
00016              "N": "E",
00017              "Q": "E",
00018              "K": "K",
00019              "R": "K",
00020              "H": "H"}

Definition at line 57 of file Reduced.py.

Definition at line 55 of file Reduced.py.

Initial value:
00001 {"L": "L",
00002              "V": "L",
00003              "I": "L",
00004              "M": "L",
00005              "C": "C",
00006              "A": "A",
00007              "G": "G",
00008              "S": "S",
00009              "T": "T",
00010              "P": "P",
00011              "F": "F",
00012              "Y": "F",
00013              "W": "W",
00014              "E": "E",
00015              "D": "D",
00016              "N": "N",
00017              "Q": "Q",
00018              "K": "K",
00019              "R": "K",
00020              "H": "H"}

Definition at line 31 of file Reduced.py.

Definition at line 132 of file Reduced.py.

Initial value:
00001 {"L": "L",
00002              "V": "L",
00003              "I": "L",
00004              "M": "L",
00005              "C": "L",
00006              "A": "A",
00007              "G": "A",
00008              "S": "A",
00009              "T": "A",
00010              "P": "A",
00011              "F": "F",
00012              "Y": "F",
00013              "W": "F",
00014              "E": "E",
00015              "D": "E",
00016              "N": "E",
00017              "Q": "E",
00018              "K": "E",
00019              "R": "E",
00020              "H": "E"}

Definition at line 108 of file Reduced.py.

Definition at line 106 of file Reduced.py.

Initial value:
00001 {"L": "L",
00002              "V": "L",
00003              "I": "L",
00004              "M": "L",
00005              "C": "L",
00006              "A": "A",
00007              "G": "A",
00008              "S": "S",
00009              "T": "S",
00010              "P": "P",
00011              "F": "F",
00012              "Y": "F",
00013              "W": "F",
00014              "E": "E",
00015              "D": "E",
00016              "N": "E",
00017              "Q": "E",
00018              "K": "K",
00019              "R": "K",
00020              "H": "H"}

Definition at line 82 of file Reduced.py.

Initial value:
00001 {"I": "A", # Aliphatic
00002          "V": "A",
00003          "L": "A",
00004          "F": "R", # Aromatic
00005          "Y": "R",
00006          "W": "R",
00007          "H": "R",
00008          "K": "C", # Charged
00009          "R": "C",
00010          "D": "C",
00011          "E": "C",
00012          "G": "T", # Tiny
00013          "A": "T",
00014          "C": "T",
00015          "S": "T",
00016          "T": "D", # Diverse
00017          "M": "D",
00018          "Q": "D",
00019          "N": "D",
00020          "P": "D"}

Definition at line 160 of file Reduced.py.