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python-biopython  1.60
Classes | Namespaces | Functions | Variables
dnal.py File Reference

Go to the source code of this file.

Classes

class  Bio.Wise.dnal.Statistics

Namespaces

namespace  Bio.Wise.dnal

Functions

def Bio.Wise.dnal._build_dnal_cmdline
def Bio.Wise.dnal._fgrep_count
def Bio.Wise.dnal._alb_line2coords
def Bio.Wise.dnal._get_coords
def Bio.Wise.dnal._any
def Bio.Wise.dnal.align
def Bio.Wise.dnal.main
def Bio.Wise.dnal._test

Variables

string Bio.Wise.dnal.__version__ = "$Revision: 1.12 $"
int Bio.Wise.dnal._SCORE_MATCH = 4
int Bio.Wise.dnal._SCORE_MISMATCH = 1
int Bio.Wise.dnal._SCORE_GAP_START = 5
int Bio.Wise.dnal._SCORE_GAP_EXTENSION = 1
list Bio.Wise.dnal._CMDLINE_DNAL = ["dnal", "-alb", "-nopretty"]
string Bio.Wise.dnal._CMDLINE_FGREP_COUNT = "fgrep -c '%s' %s"
tuple Bio.Wise.dnal._re_alb_line2coords = re.compile(r"^\[([^:]+):[^\[]+\[([^:]+):")