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python-biopython  1.60
Public Member Functions
test_SeqIO_features.TestWriteRead Class Reference

List of all members.

Public Member Functions

def test_NC_000932
def test_NC_005816
def test_gbvrl1_start
def test_NT_019265
def test_cor6
def test_arab1
def test_one_of
def test_pri1
def test_noref
def test_origin_line
def test_dbsource_wrap
def test_blank_seq
def test_extra_keywords
def test_protein_refseq
def test_protein_refseq2
def test_AAA03323
def test_AE017046
def test_DD231055_edited
def test_Human_contigs
def test_SC10H5
def test_TRBG361
def test_U87107

Detailed Description

Test can write and read back files.

Definition at line 1065 of file test_SeqIO_features.py.


Member Function Documentation

Write and read back AAA03323.embl

Definition at line 1131 of file test_SeqIO_features.py.

01131 
01132     def test_AAA03323(self):
01133         """Write and read back AAA03323.embl"""
01134         write_read(os.path.join("EMBL", "AAA03323.embl"), "embl")

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Write and read back AE017046.embl

Definition at line 1135 of file test_SeqIO_features.py.

01135 
01136     def test_AE017046(self):
01137         """Write and read back AE017046.embl"""
01138         write_read(os.path.join("EMBL", "AE017046.embl"), "embl")

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Write and read back arab1.gb

Definition at line 1087 of file test_SeqIO_features.py.

01087 
01088     def test_arab1(self):
01089         """Write and read back arab1.gb"""
01090         write_read(os.path.join("GenBank", "arab1.gb"), "gb")

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Write and read back blank_seq.gb

Definition at line 1112 of file test_SeqIO_features.py.

01112 
01113     def test_blank_seq(self):
01114         """Write and read back blank_seq.gb"""
01115         write_read(os.path.join("GenBank", "blank_seq.gb"), "gb", ["gb"])
01116         #Protein so can't convert this to EMBL format

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Write and read back cor6_6.gb

Definition at line 1083 of file test_SeqIO_features.py.

01083 
01084     def test_cor6(self):
01085         """Write and read back cor6_6.gb"""
01086         write_read(os.path.join("GenBank", "cor6_6.gb"), "gb")

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Write and read back dbsource_wrap.gb

Definition at line 1107 of file test_SeqIO_features.py.

01107 
01108     def test_dbsource_wrap(self):
01109         """Write and read back dbsource_wrap.gb"""
01110         write_read(os.path.join("GenBank", "dbsource_wrap.gb"), "gb", ["gb"])
01111         #Protein so can't convert this to EMBL format

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Write and read back DD231055_edited.embl

Definition at line 1139 of file test_SeqIO_features.py.

01139 
01140     def test_DD231055_edited(self):
01141         """Write and read back DD231055_edited.embl"""
01142         write_read(os.path.join("EMBL", "DD231055_edited.embl"), "embl")

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Write and read back extra_keywords.gb

Definition at line 1117 of file test_SeqIO_features.py.

01117 
01118     def test_extra_keywords(self):
01119         """Write and read back extra_keywords.gb"""
01120         write_read(os.path.join("GenBank", "extra_keywords.gb"), "gb")

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Write and read back gbvrl1_start.seq

Definition at line 1075 of file test_SeqIO_features.py.

01075 
01076     def test_gbvrl1_start(self):
01077         """Write and read back gbvrl1_start.seq"""
01078         write_read(os.path.join("GenBank", "gbvrl1_start.seq"), "gb")

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Write and read back Human_contigs.embl

Definition at line 1143 of file test_SeqIO_features.py.

01143 
01144     def test_Human_contigs(self):
01145         """Write and read back Human_contigs.embl"""
01146         write_read(os.path.join("EMBL", "Human_contigs.embl"), "embl")

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Write and read back NC_000932.gb

Definition at line 1067 of file test_SeqIO_features.py.

01067 
01068     def test_NC_000932(self):
01069         """Write and read back NC_000932.gb"""
01070         write_read(os.path.join("GenBank", "NC_000932.gb"), "gb")

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Write and read back NC_005816.gb

Definition at line 1071 of file test_SeqIO_features.py.

01071 
01072     def test_NC_005816(self):
01073         """Write and read back NC_005816.gb"""
01074         write_read(os.path.join("GenBank", "NC_005816.gb"), "gb")

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Write and read back noref.gb

Definition at line 1099 of file test_SeqIO_features.py.

01099 
01100     def test_noref(self):
01101         """Write and read back noref.gb"""
01102         write_read(os.path.join("GenBank", "noref.gb"), "gb")

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Write and read back NT_019265.gb

Definition at line 1079 of file test_SeqIO_features.py.

01079 
01080     def test_NT_019265(self):
01081         """Write and read back NT_019265.gb"""
01082         write_read(os.path.join("GenBank", "NT_019265.gb"), "gb")

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Write and read back of_one.gb

Definition at line 1091 of file test_SeqIO_features.py.

01091 
01092     def test_one_of(self):
01093         """Write and read back of_one.gb"""
01094         write_read(os.path.join("GenBank", "one_of.gb"), "gb")

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Write and read back origin_line.gb

Definition at line 1103 of file test_SeqIO_features.py.

01103 
01104     def test_origin_line(self):
01105         """Write and read back origin_line.gb"""
01106         write_read(os.path.join("GenBank", "origin_line.gb"), "gb")

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Write and read back pri1.gb

Definition at line 1095 of file test_SeqIO_features.py.

01095 
01096     def test_pri1(self):
01097         """Write and read back pri1.gb"""
01098         write_read(os.path.join("GenBank", "pri1.gb"), "gb")

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Write and read back protein_refseq.gb

Definition at line 1121 of file test_SeqIO_features.py.

01121 
01122     def test_protein_refseq(self):
01123         """Write and read back protein_refseq.gb"""
01124         write_read(os.path.join("GenBank", "protein_refseq.gb"), "gb", ["gb"])
01125         #Protein so can't convert this to EMBL format

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Write and read back protein_refseq2.gb

Definition at line 1126 of file test_SeqIO_features.py.

01126 
01127     def test_protein_refseq2(self):
01128         """Write and read back protein_refseq2.gb"""
01129         write_read(os.path.join("GenBank", "protein_refseq2.gb"), "gb", ["gb"])
01130         #Protein so can't convert this to EMBL format

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Write and read back SC10H5.embl

Definition at line 1147 of file test_SeqIO_features.py.

01147 
01148     def test_SC10H5(self):
01149         """Write and read back SC10H5.embl"""
01150         write_read(os.path.join("EMBL", "SC10H5.embl"), "embl")

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Write and read back TRBG361.embl

Definition at line 1151 of file test_SeqIO_features.py.

01151 
01152     def test_TRBG361(self):
01153         """Write and read back TRBG361.embl"""
01154         write_read(os.path.join("EMBL", "TRBG361.embl"), "embl")

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Write and read back U87107.embl

Definition at line 1155 of file test_SeqIO_features.py.

01155 
01156     def test_U87107(self):
01157         """Write and read back U87107.embl"""
01158         write_read(os.path.join("EMBL", "U87107.embl"), "embl")
01159 

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The documentation for this class was generated from the following file: