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python-biopython  1.60
Static Public Attributes
test_PhyloXML.ParseTests Class Reference

List of all members.

Static Public Attributes

tuple test_read_apaf = _test_read_factory(EX_APAF, (1, 0))
tuple test_read_bcl2 = _test_read_factory(EX_BCL2, (1, 0))
tuple test_read_made = _test_read_factory(EX_MADE, (6, 0))
tuple test_read_phylo = _test_read_factory(EX_PHYLO, (13, 1))
tuple test_read_dollo = _test_read_factory(EX_DOLLO, (1, 0))
tuple test_parse_apaf = _test_parse_factory(EX_APAF, 1)
tuple test_parse_bcl2 = _test_parse_factory(EX_BCL2, 1)
tuple test_parse_made = _test_parse_factory(EX_MADE, 6)
tuple test_parse_phylo = _test_parse_factory(EX_PHYLO, 13)
tuple test_parse_dollo = _test_parse_factory(EX_DOLLO, 1)
tuple test_shape_apaf
tuple test_shape_bcl2
tuple test_shape_phylo
tuple test_shape_dollo

Detailed Description

Tests for proper parsing of example phyloXML files.

Definition at line 84 of file test_PhyloXML.py.


Member Data Documentation

Definition at line 93 of file test_PhyloXML.py.

Definition at line 94 of file test_PhyloXML.py.

Definition at line 97 of file test_PhyloXML.py.

Definition at line 95 of file test_PhyloXML.py.

Definition at line 96 of file test_PhyloXML.py.

Definition at line 87 of file test_PhyloXML.py.

Definition at line 88 of file test_PhyloXML.py.

Definition at line 91 of file test_PhyloXML.py.

Definition at line 89 of file test_PhyloXML.py.

Definition at line 90 of file test_PhyloXML.py.

Initial value:
_test_shape_factory(EX_APAF,
            # lvl-2 clades, sub-clade counts, lvl-3 clades
                ( ( (2, (2, 2)),
                    (2, (2, 2)),
                  ),
                ),
            )

Definition at line 99 of file test_PhyloXML.py.

Initial value:
_test_shape_factory(EX_BCL2,
                ( ( (2, (2, 2)),
                    (2, (2, 2)),
                  ),
                ),
            )

Definition at line 106 of file test_PhyloXML.py.

Initial value:
_test_shape_factory(EX_DOLLO,
                ( ( (2, (2, 2)),
                    (2, (2, 2)),
                  ),
                ),
            )

Definition at line 154 of file test_PhyloXML.py.

Definition at line 112 of file test_PhyloXML.py.


The documentation for this class was generated from the following file: