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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.UniGene.Record Class Reference

List of all members.

Public Member Functions

def __init__
def __repr__

Public Attributes

 ID
 species
 title
 symbol
 cytoband
 express
 restr_expr
 gnm_terminus
 gene_id
 locuslink
 homol
 chromosome
 protsim
 sequence
 sts
 txmap

Detailed Description

Store a Unigene record

Here is what is stored:

    self.ID           = ''  # ID line
    self.species      = ''  # Hs, Bt, etc.
    self.title        = ''  # TITLE line
    self.symbol       = ''  # GENE line
    self.cytoband     = ''  # CYTOBAND line
    self.express      = []  # EXPRESS line, parsed on ';'
                            # Will be an array of strings
    self.restr_expr   = ''  # RESTR_EXPR line
    self.gnm_terminus = ''  # GNM_TERMINUS line
    self.gene_id      = ''  # GENE_ID line
    self.locuslink    = ''  # LOCUSLINK line
    self.homol        = ''  # HOMOL line
    self.chromosome   = ''  # CHROMOSOME line
    self.protsim      = []  # PROTSIM entries, array of Protsims
                            # Type ProtsimLine
    self.sequence     = []  # SEQUENCE entries, array of Sequence entries
                            # Type SequenceLine
    self.sts          = []  # STS entries, array of STS entries
                            # Type STSLine
    self.txmap        = []  # TXMAP entries, array of TXMap entries

Definition at line 200 of file __init__.py.


Constructor & Destructor Documentation

Definition at line 227 of file __init__.py.

00227 
00228     def __init__(self):
00229         self.ID           = ''  # ID line
00230         self.species      = ''  # Hs, Bt, etc.
00231         self.title        = ''  # TITLE line
00232         self.symbol       = ''  # GENE line
00233         self.cytoband     = ''  # CYTOBAND line
00234         self.express      = []  # EXPRESS line, parsed on ';'
00235         self.restr_expr   = ''  # RESTR_EXPR line
00236         self.gnm_terminus = ''  # GNM_TERMINUS line
00237         self.gene_id      = ''  # GENE_ID line
00238         self.locuslink    = ''  # LOCUSLINK line
00239         self.homol        = ''  # HOMOL line
00240         self.chromosome   = ''  # CHROMOSOME line
00241         self.protsim      = []  # PROTSIM entries, array of Protsims
00242         self.sequence     = []  # SEQUENCE entries, array of Sequence entries
00243         self.sts          = []  # STS entries, array of STS entries
00244         self.txmap        = []  # TXMAP entries, array of TXMap entries


Member Function Documentation

Definition at line 245 of file __init__.py.

00245 
00246     def __repr__(self):
00247         return "<%s> %s %s\n%s" % (self.__class__.__name__,
00248                           self.ID, self.symbol, self.title)


Member Data Documentation

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The documentation for this class was generated from the following file: