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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.SwissProt.Record Class Reference

List of all members.

Public Member Functions

def __init__

Public Attributes

 entry_name
 data_class
 molecule_type
 sequence_length
 accessions
 created
 sequence_update
 annotation_update
 description
 gene_name
 organism
 organelle
 organism_classification
 taxonomy_id
 host_organism
 host_taxonomy_id
 references
 comments
 cross_references
 keywords
 features
 seqinfo
 sequence

Detailed Description

Holds information from a SwissProt record.

Members:
entry_name        Name of this entry, e.g. RL1_ECOLI.
data_class        Either 'STANDARD' or 'PRELIMINARY'.
molecule_type     Type of molecule, 'PRT',
sequence_length   Number of residues.

accessions        List of the accession numbers, e.g. ['P00321']
created           A tuple of (date, release).
sequence_update   A tuple of (date, release).
annotation_update A tuple of (date, release).

description       Free-format description.
gene_name         Gene name.  See userman.txt for description.
organism          The source of the sequence.
organelle         The origin of the sequence.
organism_classification  The taxonomy classification.  List of strings.
                         (http://www.ncbi.nlm.nih.gov/Taxonomy/)
taxonomy_id       A list of NCBI taxonomy id's.
host_organism     A list of names of the hosts of a virus, if any.
host_taxonomy_id  A list of NCBI taxonomy id's of the hosts, if any.
references        List of Reference objects.
comments          List of strings.
cross_references  List of tuples (db, id1[, id2][, id3]).  See the docs.
keywords          List of the keywords.
features          List of tuples (key name, from, to, description).
                  from and to can be either integers for the residue
                  numbers, '<', '>', or '?'

seqinfo           tuple of (length, molecular weight, CRC32 value)
sequence          The sequence.

Definition at line 26 of file __init__.py.


Constructor & Destructor Documentation

Definition at line 61 of file __init__.py.

00061 
00062     def __init__(self):
00063         self.entry_name = None
00064         self.data_class = None
00065         self.molecule_type = None
00066         self.sequence_length = None
00067         
00068         self.accessions = []
00069         self.created = None
00070         self.sequence_update = None
00071         self.annotation_update = None
00072         
00073         self.description = []
00074         self.gene_name = ''
00075         self.organism = []
00076         self.organelle = ''
00077         self.organism_classification = []
00078         self.taxonomy_id = []
00079         self.host_organism = []
00080         self.host_taxonomy_id = []
00081         self.references = []
00082         self.comments = []
00083         self.cross_references = []
00084         self.keywords = []
00085         self.features = []
00086         
00087         self.seqinfo = None
00088         self.sequence = ''
00089 


Member Data Documentation

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The documentation for this class was generated from the following file: