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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.Sequencing.Ace.rt Class Reference

List of all members.

Public Member Functions

def __init__

Public Attributes

 name
 tag_type
 program
 padded_start
 padded_end
 date
 comment

Detailed Description

RT (transient read tags), generated by crossmatch and phrap.

Definition at line 135 of file Ace.py.


Constructor & Destructor Documentation

def Bio.Sequencing.Ace.rt.__init__ (   self,
  line = None 
)

Definition at line 137 of file Ace.py.

00137 
00138     def __init__(self, line=None):
00139         self.name=''
00140         self.tag_type=''
00141         self.program=''
00142         self.padded_start=None
00143         self.padded_end=None
00144         self.date=''
00145         self.comment=[]
00146         if line:
00147             header=line.split()
00148             self.name=header[0]
00149             self.tag_type=header[1]
00150             self.program=header[2]
00151             self.padded_start=int(header[3])
00152             self.padded_end=int(header[4])
00153             self.date=header[5]


Member Data Documentation

Definition at line 144 of file Ace.py.

Definition at line 143 of file Ace.py.

Definition at line 138 of file Ace.py.

Definition at line 142 of file Ace.py.

Definition at line 141 of file Ace.py.

Definition at line 140 of file Ace.py.

Definition at line 139 of file Ace.py.


The documentation for this class was generated from the following file: