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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.Sequencing.Ace.af Class Reference

List of all members.

Public Member Functions

def __init__

Public Attributes

 name
 coru
 padded_start

Detailed Description

AF lines, define the location of the read within the contig.

Note attribute coru is short for complemented (C) or uncomplemented (U),
since the strand information is stored in an ACE file using either the
C or U character.

Definition at line 106 of file Ace.py.


Constructor & Destructor Documentation

def Bio.Sequencing.Ace.af.__init__ (   self,
  line = None 
)

Definition at line 113 of file Ace.py.

00113 
00114     def __init__(self, line=None):
00115         self.name=''
00116         self.coru=None
00117         self.padded_start=None
00118         if line:
00119             header = line.split()
00120             self.name = header[1]
00121             self.coru = header[2]
00122             self.padded_start = int(header[3])


Member Data Documentation

Definition at line 115 of file Ace.py.

Definition at line 114 of file Ace.py.

Definition at line 116 of file Ace.py.


The documentation for this class was generated from the following file: