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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.Sequencing.Ace.Reads Class Reference

List of all members.

Public Member Functions

def __init__

Public Attributes

 rd
 qa
 ds
 rt
 wr

Detailed Description

Holds information about a read supporting an ACE contig.

Definition at line 204 of file Ace.py.


Constructor & Destructor Documentation

def Bio.Sequencing.Ace.Reads.__init__ (   self,
  line = None 
)

Definition at line 206 of file Ace.py.

00206 
00207     def __init__(self, line=None):
00208         self.rd=None    # one per read
00209         self.qa=None    # one per read
00210         self.ds=None    # none or one per read
00211         self.rt=None    # none or many per read
00212         self.wr=None    # none or many per read
00213         if line:
00214             self.rd = rd()
00215             header = line.split()
00216             self.rd.name = header[1]
00217             self.rd.padded_bases = int(header[2])
00218             self.rd.info_items = int(header[3])
00219             self.rd.read_tags = int(header[4])
        

Member Data Documentation

Definition at line 209 of file Ace.py.

Definition at line 208 of file Ace.py.

Definition at line 207 of file Ace.py.

Definition at line 210 of file Ace.py.

Definition at line 211 of file Ace.py.


The documentation for this class was generated from the following file: