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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.Sequencing.Ace.Contig Class Reference

List of all members.

Public Member Functions

def __init__

Public Attributes

 name
 nbases
 nreads
 nsegments
 uorc
 sequence
 quality
 af
 bs
 reads
 ct
 wa

Detailed Description

Holds information about a contig from an ACE record.

Definition at line 220 of file Ace.py.


Constructor & Destructor Documentation

def Bio.Sequencing.Ace.Contig.__init__ (   self,
  line = None 
)

Definition at line 222 of file Ace.py.

00222 
00223     def __init__(self, line=None):
00224         self.name = ''
00225         self.nbases=None
00226         self.nreads=None
00227         self.nsegments=None
00228         self.uorc=None
00229         self.sequence=""
00230         self.quality=[]
00231         self.af=[]
00232         self.bs=[]
00233         self.reads=[]
00234         self.ct=None    # none or many
00235         self.wa=None    # none or many
00236         if line:
00237             header = line.split()
00238             self.name = header[1]
00239             self.nbases = int(header[2])
00240             self.nreads = int(header[3])
00241             self.nsegments = int(header[4])
00242             self.uorc = header[5]


Member Data Documentation

Definition at line 230 of file Ace.py.

Definition at line 231 of file Ace.py.

Definition at line 233 of file Ace.py.

Definition at line 223 of file Ace.py.

Definition at line 224 of file Ace.py.

Definition at line 225 of file Ace.py.

Definition at line 226 of file Ace.py.

Definition at line 229 of file Ace.py.

Definition at line 232 of file Ace.py.

Definition at line 228 of file Ace.py.

Definition at line 227 of file Ace.py.

Definition at line 234 of file Ace.py.


The documentation for this class was generated from the following file: