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python-biopython  1.60
Public Member Functions | Public Attributes | Static Public Attributes
Bio.Phylo.PhyloXML.Reference Class Reference
Inheritance diagram for Bio.Phylo.PhyloXML.Reference:
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List of all members.

Public Member Functions

def __init__
def __repr__

Public Attributes


Static Public Attributes

tuple re_doi = re.compile(r'[a-zA-Z0-9_\.]+/[a-zA-Z0-9_\.]+')

Detailed Description

Literature reference for a clade.

NB: Whenever possible, use the ``doi`` attribute instead of the free-text
``desc`` element.

Definition at line 965 of file

Constructor & Destructor Documentation

def Bio.Phylo.PhyloXML.Reference.__init__ (   self,
  doi = None,
  desc = None 

Definition at line 973 of file

00974     def __init__(self, doi=None, desc=None):
00975         _check_str(doi, self.re_doi.match)
00976         self.doi = doi
00977         self.desc = desc

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Member Function Documentation

def Bio.Phylo.BaseTree.TreeElement.__repr__ (   self) [inherited]
Show this object's constructor with its primitive arguments.

Definition at line 216 of file

00217     def __repr__(self):
00218         """Show this object's constructor with its primitive arguments."""
00219         def pair_as_kwarg_string(key, val):
00220             if isinstance(val, basestring):
00221                 return "%s='%s'" % (key, _sugar.trim_str(unicode(val)))
00222             return "%s=%s" % (key, val)
00223         return u'%s(%s)' % (self.__class__.__name__,
00224                             ', '.join(pair_as_kwarg_string(key, val)
00225                                   for key, val in self.__dict__.iteritems()
00226                                   if val is not None and
00227                                   type(val) in (str, int, float, bool, unicode)
00228                                   ))

Member Data Documentation

Definition at line 976 of file

Definition at line 975 of file

tuple Bio.Phylo.PhyloXML.Reference.re_doi = re.compile(r'[a-zA-Z0-9_\.]+/[a-zA-Z0-9_\.]+') [static]

Definition at line 971 of file

The documentation for this class was generated from the following file: