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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.Phylo.PhyloXML.Distribution Class Reference
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List of all members.

Public Member Functions

def __init__
def __repr__

Public Attributes

 desc
 points
 polygons

Detailed Description

Geographic distribution of the items of a clade (species, sequences).

Intended for phylogeographic applications.

:Parameters:
    desc : string
        free-text description of the location
    points : list of `Point` objects
        coordinates (similar to the 'Point' element in Google's KML format)
    polygons : list of `Polygon` objects
        coordinate sets defining geographic regions

Definition at line 712 of file PhyloXML.py.


Constructor & Destructor Documentation

def Bio.Phylo.PhyloXML.Distribution.__init__ (   self,
  desc = None,
  points = None,
  polygons = None 
)

Definition at line 725 of file PhyloXML.py.

00725 
00726     def __init__(self, desc=None, points=None, polygons=None):
00727         self.desc = desc
00728         self.points = points or []
00729         self.polygons = polygons or []
00730 


Member Function Documentation

def Bio.Phylo.BaseTree.TreeElement.__repr__ (   self) [inherited]
Show this object's constructor with its primitive arguments.

Definition at line 216 of file BaseTree.py.

00216 
00217     def __repr__(self):
00218         """Show this object's constructor with its primitive arguments."""
00219         def pair_as_kwarg_string(key, val):
00220             if isinstance(val, basestring):
00221                 return "%s='%s'" % (key, _sugar.trim_str(unicode(val)))
00222             return "%s=%s" % (key, val)
00223         return u'%s(%s)' % (self.__class__.__name__,
00224                             ', '.join(pair_as_kwarg_string(key, val)
00225                                   for key, val in self.__dict__.iteritems()
00226                                   if val is not None and
00227                                   type(val) in (str, int, float, bool, unicode)
00228                                   ))


Member Data Documentation

Definition at line 726 of file PhyloXML.py.

Definition at line 727 of file PhyloXML.py.

Definition at line 728 of file PhyloXML.py.


The documentation for this class was generated from the following file: