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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.Phylo.PhyloXML.CladeRelation Class Reference
Inheritance diagram for Bio.Phylo.PhyloXML.CladeRelation:
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List of all members.

Public Member Functions

def __init__
def __repr__

Public Attributes

 distance
 type
 id_ref_0
 id_ref_1
 confidence

Detailed Description

Expresses a typed relationship between two clades.

For example, this could be used to describe multiple parents of a clade.

@type id_ref_0: str
@type id_ref_1: str
@type distance: str
@type type: str

@type confidence: Confidence

Definition at line 512 of file PhyloXML.py.


Constructor & Destructor Documentation

def Bio.Phylo.PhyloXML.CladeRelation.__init__ (   self,
  type,
  id_ref_0,
  id_ref_1,
  distance = None,
  confidence = None 
)

Definition at line 525 of file PhyloXML.py.

00525 
00526             distance=None, confidence=None):
00527         self.distance = distance
00528         self.type = type
00529         self.id_ref_0 = id_ref_0
00530         self.id_ref_1 = id_ref_1
00531         self.confidence = confidence
00532 


Member Function Documentation

def Bio.Phylo.BaseTree.TreeElement.__repr__ (   self) [inherited]
Show this object's constructor with its primitive arguments.

Definition at line 216 of file BaseTree.py.

00216 
00217     def __repr__(self):
00218         """Show this object's constructor with its primitive arguments."""
00219         def pair_as_kwarg_string(key, val):
00220             if isinstance(val, basestring):
00221                 return "%s='%s'" % (key, _sugar.trim_str(unicode(val)))
00222             return "%s=%s" % (key, val)
00223         return u'%s(%s)' % (self.__class__.__name__,
00224                             ', '.join(pair_as_kwarg_string(key, val)
00225                                   for key, val in self.__dict__.iteritems()
00226                                   if val is not None and
00227                                   type(val) in (str, int, float, bool, unicode)
00228                                   ))


Member Data Documentation

Definition at line 530 of file PhyloXML.py.

Definition at line 526 of file PhyloXML.py.

Definition at line 528 of file PhyloXML.py.

Definition at line 529 of file PhyloXML.py.

Definition at line 527 of file PhyloXML.py.


The documentation for this class was generated from the following file: