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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.FSSP.FSSPAlignRec Class Reference

List of all members.

Public Member Functions

def __init__
def add_align_list
def pos_align_list2dict

Public Attributes

 abs_res_num
 pdb_res_num
 chain_id
 res_name
 ss1
 turn3
 turn4
 turn5
 pos_align_dict
 PosAlignList

Detailed Description

Definition at line 127 of file __init__.py.


Constructor & Destructor Documentation

def Bio.FSSP.FSSPAlignRec.__init__ (   self,
  in_fff_rec 
)

Definition at line 128 of file __init__.py.

00128 
00129    def __init__(self,in_fff_rec):
00130       # print in_fff_rec
00131       self.abs_res_num = int(in_fff_rec[fssp_rec.align.abs_res_num])
00132       self.pdb_res_num = in_fff_rec[fssp_rec.align.pdb_res_num].strip()
00133       self.chain_id  = in_fff_rec[fssp_rec.align.chain_id]
00134       if self.chain_id == ' ':
00135          self.chain_id = '0'
00136       self.res_name = in_fff_rec[fssp_rec.align.res_name]
00137       if self.res_name == self.res_name.lower():
00138          self.res_name = 'C'
00139       self.ss1 = in_fff_rec[fssp_rec.align.ss1]
00140       self.turn3 = in_fff_rec[fssp_rec.align.turn3]
00141       self.turn4 = in_fff_rec[fssp_rec.align.turn4]
00142       self.turn5 = in_fff_rec[fssp_rec.align.turn5]
00143       self.pos_align_dict = {}
      self.PosAlignList = []

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Member Function Documentation

def Bio.FSSP.FSSPAlignRec.add_align_list (   self,
  align_list 
)

Definition at line 144 of file __init__.py.

00144 
00145    def add_align_list(self,align_list):
00146       for i in align_list:
         self.PosAlignList.append(PosAlign(i))

Definition at line 147 of file __init__.py.

00147 
00148    def pos_align_list2dict(self):
00149       j = 1
00150       for i in self.PosAlignList:
00151          self.pos_align_dict[j] = i
00152          j = j + 1
00153 


Member Data Documentation

Definition at line 130 of file __init__.py.

Definition at line 132 of file __init__.py.

Definition at line 131 of file __init__.py.

Definition at line 142 of file __init__.py.

Definition at line 143 of file __init__.py.

Definition at line 135 of file __init__.py.

Definition at line 138 of file __init__.py.

Definition at line 139 of file __init__.py.

Definition at line 140 of file __init__.py.

Definition at line 141 of file __init__.py.


The documentation for this class was generated from the following file: