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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.CAPS.DifferentialCutsite Class Reference

List of all members.

Public Member Functions

def __init__

Public Attributes

 start
 enzyme
 cuts_in
 blocked_in

Detailed Description

A differential cutsite is a location in an alignment where an enzyme cuts
at least one sequence and also cannot cut at least one other sequence.

Members:
start       Where it lives in the alignment.
enzyme      The enzyme that causes this.
cuts_in     A list of sequences (as indexes into the alignment) the
            enzyme cuts in.
blocked_in  A list of sequences (as indexes into the alignment) the
            enzyme is blocked in.

Definition at line 17 of file __init__.py.


Constructor & Destructor Documentation

def Bio.CAPS.DifferentialCutsite.__init__ (   self,
  kwds 
)
Initialize a DifferentialCutsite.

Each member (as listed in the class description) should be included as a
keyword.

Definition at line 31 of file __init__.py.

00031 
00032     def __init__(self, **kwds):
00033         """Initialize a DifferentialCutsite.
00034 
00035         Each member (as listed in the class description) should be included as a
00036         keyword.
00037         """
00038         
00039         self.start = int(kwds["start"])
00040         self.enzyme = kwds["enzyme"]
00041         self.cuts_in = kwds["cuts_in"]
00042         self.blocked_in = kwds["blocked_in"]

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Member Data Documentation

Definition at line 41 of file __init__.py.

Definition at line 40 of file __init__.py.

Definition at line 39 of file __init__.py.

Definition at line 38 of file __init__.py.


The documentation for this class was generated from the following file: