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python-biopython  1.60
Public Member Functions | Public Attributes
Bio.Blast.Record.Blast Class Reference
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List of all members.

Public Member Functions

def __init__

Public Attributes

 descriptions
 alignments
 multiple_alignment
 application
 version
 date
 reference
 query
 query_letters
 database
 database_sequences
 database_letters
 database_name
 posted_date
 num_letters_in_database
 num_sequences_in_database
 ka_params
 gapped
 ka_params_gap
 matrix
 gap_penalties
 sc_match
 sc_mismatch
 num_hits
 num_sequences
 num_good_extends
 num_seqs_better_e
 hsps_no_gap
 hsps_prelim_gapped
 hsps_prelim_gapped_attemped
 hsps_gapped
 query_id
 query_length
 database_length
 effective_hsp_length
 effective_query_length
 effective_database_length
 effective_search_space
 effective_search_space_used
 frameshift
 threshold
 window_size
 dropoff_1st_pass
 gap_x_dropoff
 gap_x_dropoff_final
 gap_trigger
 blast_cutoff

Detailed Description

Saves the results from a blast search.

Members:
descriptions        A list of Description objects.
alignments          A list of Alignment objects.
multiple_alignment  A MultipleAlignment object.
+ members inherited from base classes

Definition at line 344 of file Record.py.


Constructor & Destructor Documentation

Reimplemented from Bio.Blast.Record.Header.

Definition at line 354 of file Record.py.

00354 
00355     def __init__(self):
00356         Header.__init__(self)
00357         DatabaseReport.__init__(self)
00358         Parameters.__init__(self)
00359         self.descriptions = []
00360         self.alignments = []
00361         self.multiple_alignment = None

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Member Data Documentation

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The documentation for this class was generated from the following file: