Back to index

python-biopython  1.60
Public Member Functions | Public Attributes
Bio.Blast.ParseBlastTable.BlastTableEntry Class Reference

List of all members.

Public Member Functions

def __init__

Public Attributes

 qid
 sid
 pid
 ali_len
 mis
 gaps
 q_bounds
 s_bounds
 e_value
 bit_score

Detailed Description

Definition at line 11 of file ParseBlastTable.py.


Constructor & Destructor Documentation

Definition at line 12 of file ParseBlastTable.py.

00012 
00013    def __init__(self,in_rec):
00014       bt_fields = in_rec.split()
00015       self.qid = bt_fields[0].split('|')
00016       self.sid = bt_fields[1].split('|')
00017       self.pid = float(bt_fields[2])
00018       self.ali_len = int(bt_fields[3])
00019       self.mis = int(bt_fields[4])
00020       self.gaps = int(bt_fields[5])
00021       self.q_bounds = (int(bt_fields[6]), int(bt_fields[7]))
00022       self.s_bounds = (int(bt_fields[8]), int(bt_fields[9]))
00023       self.e_value = float(bt_fields[10])
00024       self.bit_score = float(bt_fields[11])
      

Here is the caller graph for this function:


Member Data Documentation

Definition at line 17 of file ParseBlastTable.py.

Definition at line 23 of file ParseBlastTable.py.

Definition at line 22 of file ParseBlastTable.py.

Definition at line 19 of file ParseBlastTable.py.

Definition at line 18 of file ParseBlastTable.py.

Definition at line 16 of file ParseBlastTable.py.

Definition at line 20 of file ParseBlastTable.py.

Definition at line 14 of file ParseBlastTable.py.

Definition at line 21 of file ParseBlastTable.py.

Definition at line 15 of file ParseBlastTable.py.


The documentation for this class was generated from the following file: