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python-biopython  1.60
Classes | Namespaces | Variables
StructureAlignment.py File Reference

Go to the source code of this file.

Classes

class  Bio.PDB.StructureAlignment.StructureAlignment

Namespaces

namespace  Bio.PDB.StructureAlignment

Variables

tuple Bio.PDB.StructureAlignment.fa = AlignIO.read(open(sys.argv[1]), "fasta", generic_protein)
list Bio.PDB.StructureAlignment.pdb_file1 = sys.argv[2]
list Bio.PDB.StructureAlignment.pdb_file2 = sys.argv[3]
tuple Bio.PDB.StructureAlignment.p = PDBParser()
tuple Bio.PDB.StructureAlignment.s1 = p.get_structure('1', pdb_file1)
tuple Bio.PDB.StructureAlignment.s2 = p.get_structure('2', pdb_file2)
list Bio.PDB.StructureAlignment.m1 = s1[0]
list Bio.PDB.StructureAlignment.m2 = s2[0]
tuple Bio.PDB.StructureAlignment.al = StructureAlignment(fa, m1, m2)