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python-biopython  1.60
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Proux_et_al_2002_Figure_6.py File Reference

Go to the source code of this file.

Namespaces

namespace  Proux_et_al_2002_Figure_6

Functions

def Proux_et_al_2002_Figure_6.get_feature

Variables

string Proux_et_al_2002_Figure_6.name = "Proux Fig 6"
tuple Proux_et_al_2002_Figure_6.A_rec = SeqIO.read("NC_002703.gbk", "gb")
tuple Proux_et_al_2002_Figure_6.B_rec = SeqIO.read("AF323668.gbk", "gb")
tuple Proux_et_al_2002_Figure_6.C_rec = SeqIO.read("NC_003212.gbk", "gb")
tuple Proux_et_al_2002_Figure_6.records = dict((rec.name, rec) for rec in [A_rec, B_rec, C_rec])
list Proux_et_al_2002_Figure_6.A_colors = [red]
list Proux_et_al_2002_Figure_6.B_colors = [red]
list Proux_et_al_2002_Figure_6.C_colors = [grey]
list Proux_et_al_2002_Figure_6.A_vs_B
list Proux_et_al_2002_Figure_6.B_vs_C
tuple Proux_et_al_2002_Figure_6.gd_diagram = GenomeDiagram.Diagram(name)
dictionary Proux_et_al_2002_Figure_6.feature_sets = {}
int Proux_et_al_2002_Figure_6.max_len = 0
tuple Proux_et_al_2002_Figure_6.gd_track_for_features
list Proux_et_al_2002_Figure_6.features_X = records[X]
list Proux_et_al_2002_Figure_6.features_Y = records[Y]
list Proux_et_al_2002_Figure_6.set_X = feature_sets[X]
list Proux_et_al_2002_Figure_6.set_Y = feature_sets[Y]
tuple Proux_et_al_2002_Figure_6.color = colors.linearlyInterpolatedColor(colors.white, colors.firebrick, 0, 100, score)
 Proux_et_al_2002_Figure_6.border = colors.lightgrey
tuple Proux_et_al_2002_Figure_6.f_x = get_feature(features_X, x)
tuple Proux_et_al_2002_Figure_6.F_x
tuple Proux_et_al_2002_Figure_6.f_y = get_feature(features_Y, y)
tuple Proux_et_al_2002_Figure_6.F_y
list Proux_et_al_2002_Figure_6.gd_feature_set = feature_sets[record.name]
int Proux_et_al_2002_Figure_6.i = 0
string Proux_et_al_2002_Figure_6.label_position = "start"
int Proux_et_al_2002_Figure_6.label_size = 6
int Proux_et_al_2002_Figure_6.start = 0