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python-biopython  1.60
Classes | Namespaces | Functions | Variables
Polypeptide.py File Reference

Go to the source code of this file.

Classes

class  Bio.PDB.Polypeptide.Polypeptide
class  Bio.PDB.Polypeptide._PPBuilder
class  Bio.PDB.Polypeptide.CaPPBuilder
class  Bio.PDB.Polypeptide.PPBuilder

Namespaces

namespace  Bio.PDB.Polypeptide

Functions

def Bio.PDB.Polypeptide.index_to_one
def Bio.PDB.Polypeptide.one_to_index
def Bio.PDB.Polypeptide.index_to_three
def Bio.PDB.Polypeptide.three_to_index
def Bio.PDB.Polypeptide.three_to_one
def Bio.PDB.Polypeptide.one_to_three
def Bio.PDB.Polypeptide.is_aa

Variables

list Bio.PDB.Polypeptide.standard_aa_names
string Bio.PDB.Polypeptide.aa1 = "ACDEFGHIKLMNPQRSTVWY"
 Bio.PDB.Polypeptide.aa3 = standard_aa_names
dictionary Bio.PDB.Polypeptide.d1_to_index = {}
dictionary Bio.PDB.Polypeptide.dindex_to_1 = {}
dictionary Bio.PDB.Polypeptide.d3_to_index = {}
dictionary Bio.PDB.Polypeptide.dindex_to_3 = {}
list Bio.PDB.Polypeptide.n1 = aa1[i]
list Bio.PDB.Polypeptide.n3 = aa3[i]
tuple Bio.PDB.Polypeptide.p = PDBParser(PERMISSIVE=True)
tuple Bio.PDB.Polypeptide.s = p.get_structure("scr", sys.argv[1])
tuple Bio.PDB.Polypeptide.ppb = PPBuilder()