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python-biopython  1.60
Classes | Namespaces | Functions | Variables
PhyloXMLIO.py File Reference

Go to the source code of this file.

Classes

class  Bio.Phylo.PhyloXMLIO.PhyloXMLError
class  Bio.Phylo.PhyloXMLIO.Parser
class  Bio.Phylo.PhyloXMLIO.Writer

Namespaces

namespace  Bio.Phylo.PhyloXMLIO

Functions

def Bio.Phylo.PhyloXMLIO.register_namespace
def Bio.Phylo.PhyloXMLIO.read
def Bio.Phylo.PhyloXMLIO.parse
def Bio.Phylo.PhyloXMLIO.write
def Bio.Phylo.PhyloXMLIO._local
def Bio.Phylo.PhyloXMLIO._split_namespace
def Bio.Phylo.PhyloXMLIO._ns
def Bio.Phylo.PhyloXMLIO._get_child_as
def Bio.Phylo.PhyloXMLIO._get_child_text
def Bio.Phylo.PhyloXMLIO._get_children_as
def Bio.Phylo.PhyloXMLIO._get_children_text
def Bio.Phylo.PhyloXMLIO._indent
def Bio.Phylo.PhyloXMLIO._str2bool
def Bio.Phylo.PhyloXMLIO._dict_str2bool
def Bio.Phylo.PhyloXMLIO._int
def Bio.Phylo.PhyloXMLIO._float
def Bio.Phylo.PhyloXMLIO._collapse_wspace
def Bio.Phylo.PhyloXMLIO._replace_wspace
def Bio.Phylo.PhyloXMLIO._serialize
def Bio.Phylo.PhyloXMLIO._clean_attrib
def Bio.Phylo.PhyloXMLIO._handle_complex
def Bio.Phylo.PhyloXMLIO._handle_simple

Variables

string Bio.Phylo.PhyloXMLIO.__docformat__ = "restructuredtext en"
dictionary Bio.Phylo.PhyloXMLIO.NAMESPACES
 Bio.Phylo.PhyloXMLIO.register_namespace = ElementTree.register_namespace

Class Documentation

class Bio::Phylo::PhyloXMLIO::PhyloXMLError
Exception raised when PhyloXML object construction cannot continue.

XML syntax errors will be found and raised by the underlying ElementTree
module; this exception is for valid XML that breaks the phyloXML
specification.

Definition at line 58 of file PhyloXMLIO.py.