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python-biopython  1.60
Classes | Namespaces | Functions | Variables
KDTree.py File Reference

Go to the source code of this file.

Classes

class  Bio.KDTree.KDTree.KDTree

Namespaces

namespace  Bio.KDTree.KDTree

Functions

def Bio.KDTree.KDTree._dist
def Bio.KDTree.KDTree._neighbor_test
def Bio.KDTree.KDTree._test

Variables

int Bio.KDTree.KDTree.nr_points = 100000
int Bio.KDTree.KDTree.dim = 3
int Bio.KDTree.KDTree.bucket_size = 10
int Bio.KDTree.KDTree.query_radius = 10
tuple Bio.KDTree.KDTree.coords = (200*random((nr_points, dim)))
tuple Bio.KDTree.KDTree.kdtree = KDTree(dim, bucket_size)
tuple Bio.KDTree.KDTree.indices = kdtree.all_get_indices()
tuple Bio.KDTree.KDTree.radii = kdtree.all_get_radii()
tuple Bio.KDTree.KDTree.center = random(dim)