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python-biopython  1.60
Classes | Namespaces | Functions | Variables
FragmentMapper.py File Reference

Go to the source code of this file.

Classes

class  Bio.PDB.FragmentMapper.Fragment
class  Bio.PDB.FragmentMapper.FragmentMapper

Namespaces

namespace  Bio.PDB.FragmentMapper

Functions

def Bio.PDB.FragmentMapper._read_fragments
def Bio.PDB.FragmentMapper._make_fragment_list
def Bio.PDB.FragmentMapper._map_fragment_list

Variables

string Bio.PDB.FragmentMapper._FRAGMENT_FILE = "lib_%s_z_%s.txt"
tuple Bio.PDB.FragmentMapper.p = PDBParser()
tuple Bio.PDB.FragmentMapper.s = p.get_structure("X", sys.argv[1])
list Bio.PDB.FragmentMapper.m = s[0]
tuple Bio.PDB.FragmentMapper.fm = FragmentMapper(m, 10, 5, "levitt_data")