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python-biopython  1.60
Classes | Namespaces | Functions | Variables
BioSeqDatabase.py File Reference

Go to the source code of this file.

Classes

class  BioSQL.BioSeqDatabase.DBServer
class  BioSQL.BioSeqDatabase.Adaptor
class  BioSQL.BioSeqDatabase.BioSeqDatabase

Namespaces

namespace  BioSQL.BioSeqDatabase

Functions

def BioSQL.BioSeqDatabase.open_database
def BioSQL.BioSeqDatabase.fetch_seqid_by_display_id
 assert len(rv) == 1, "More than one biodatabase with name %r" % dbname
def BioSQL.BioSeqDatabase.fetch_seqid_by_accession
def BioSQL.BioSeqDatabase.fetch_seqids_by_accession
def BioSQL.BioSeqDatabase.fetch_seqid_by_version
def BioSQL.BioSeqDatabase.fetch_seqid_by_identifier
def BioSQL.BioSeqDatabase.list_biodatabase_names
def BioSQL.BioSeqDatabase.list_bioentry_ids
def BioSQL.BioSeqDatabase.list_bioentry_display_ids
def BioSQL.BioSeqDatabase.list_any_ids
def BioSQL.BioSeqDatabase.execute_one
def BioSQL.BioSeqDatabase.execute
def BioSQL.BioSeqDatabase.get_subseq_as_string
def BioSQL.BioSeqDatabase.execute_and_fetch_col0
def BioSQL.BioSeqDatabase.execute_and_fetchall

Variables

 BioSQL.BioSeqDatabase._POSTGRES_RULES_PRESENT = False
dictionary BioSQL.BioSeqDatabase._allowed_lookups