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python-biopython  1.60
Classes | Namespaces | Functions | Variables
__init__.py File Reference

Go to the source code of this file.

Classes

class  Bio.Alphabet.Alphabet
class  Bio.Alphabet.SingleLetterAlphabet
class  Bio.Alphabet.ProteinAlphabet
 Protein. More...
class  Bio.Alphabet.NucleotideAlphabet
 DNA. More...
class  Bio.Alphabet.DNAAlphabet
class  Bio.Alphabet.RNAAlphabet
 RNA. More...
class  Bio.Alphabet.SecondaryStructure
 Other per-sequence encodings. More...
class  Bio.Alphabet.ThreeLetterProtein
class  Bio.Alphabet.AlphabetEncoder
class  Bio.Alphabet.Gapped
class  Bio.Alphabet.HasStopCodon

Namespaces

namespace  Bio.Alphabet

Functions

def Bio.Alphabet._get_base_alphabet
def Bio.Alphabet._ungap
def Bio.Alphabet._consensus_base_alphabet
def Bio.Alphabet._consensus_alphabet
def Bio.Alphabet._check_type_compatible
def Bio.Alphabet._verify_alphabet

Variables

tuple Bio.Alphabet.generic_alphabet = Alphabet()
tuple Bio.Alphabet.single_letter_alphabet = SingleLetterAlphabet()
tuple Bio.Alphabet.generic_protein = ProteinAlphabet()
tuple Bio.Alphabet.generic_nucleotide = NucleotideAlphabet()
tuple Bio.Alphabet.generic_dna = DNAAlphabet()
tuple Bio.Alphabet.generic_rna = RNAAlphabet()