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python-biopython  1.60
Namespaces | Variables
ACT_example.py File Reference

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Namespaces

namespace  ACT_example

Variables

string ACT_example.input_folder = "/Applications/Artemis/Artemis.app/Contents/artemis/etc"
string ACT_example.name = "af063097_v_b132222"
string ACT_example.file_a = "af063097.embl"
string ACT_example.file_b = "b132222.embl"
string ACT_example.format_a = "embl"
string ACT_example.format_b = "embl"
string ACT_example.file_a_vs_b = "af063097_v_b132222.crunch"
list ACT_example.genomes
list ACT_example.comparisons = [os.path.join(input_folder, file_a_vs_b)]
tuple ACT_example.gd_diagram = Diagram(name, track_size=0.35, circular=False)
tuple ACT_example.tracks = dict()
tuple ACT_example.feature_sets = dict()
tuple ACT_example.records = dict()
int ACT_example.scale_smalltick_interval = 1000
int ACT_example.scale_largetick_interval = 10000
int ACT_example.greytrack = 0
list ACT_example.q = genomes[i+1]
list ACT_example.s = genomes[i]
list ACT_example.q_set = feature_sets[q]
list ACT_example.s_set = feature_sets[s]
tuple ACT_example.handle = open(crunch_file)
tuple ACT_example.parts = line.rstrip("\n")
 ACT_example.flip = False
tuple ACT_example.c = colors.Color(0, 0, 1, alpha=0.25)
 ACT_example.b = False
tuple ACT_example.q_feature
tuple ACT_example.s_feature
list ACT_example.record = records[f]
list ACT_example.feature_set = feature_sets[f]
 ACT_example.color = colors.lightblue,
 ACT_example.border = colors.blue)
string ACT_example.orientation = "landscape"